FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004048797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1462261
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCGATCA524323.5856799846265477No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC240451.6443712852903827No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGA57430.3927479430826645No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGATCAGTATCTC38090.26048701292040205No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA37170.254195386459736No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG36000.24619407889562805No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCGATCA36000.24619407889562805No Hit
CGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGATCAGTATCTC22600.15455517175114428No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA19480.13321835158018985No Hit
CCTTCAGACCTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCGA18700.12788414653745125No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18350.12549059299263265No Hit
GCGTAACTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGATCAG17600.12036154968230707No Hit
TGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGATCAGTATCTC16930.11577960432508287No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)