FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004048984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004048984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1635895
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC195621.1957980188215014No Hit
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACTCCTGA187881.1484844687464661No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTCC21430.13099862766253334No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACCTGTCTCTTATACA16760.10245156321157531No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)