FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004049055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004049055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1596805
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCT575283.602694129840525No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC508123.1821042644530797No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG137660.8620964989463334No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGA137170.8590278712804631No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCT94210.5899906375543664No Hit
CCTTCAGACCTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGA46170.28913987619026743No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA44620.27943299275741246No Hit
CTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTATGCCGT40710.2549465964848557No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTC38360.24022970869955942No Hit
CGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTC31110.19482654425556034No Hit
GCGTAACTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTA30690.19219629197052865No Hit
GGACTCCTCCTTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC27240.1705906482006256No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA26050.16313826672636922No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACCTGTCTCTTATACA24540.1536818835111363No Hit
TGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTC24130.15111425628051015No Hit
CTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTA20680.1295086125106071No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA18100.113351348473984No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTATGCC16770.10502221623805036No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)