FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004049057

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004049057
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1333555
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC278362.0873529775674795No Hit
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACTACGCT193041.4475593432591833No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTAC78550.5890270742489061No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG59260.4443761224696394No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACTACGCT26760.20066663917123775No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA17180.12882858224820123No Hit
CCTTCAGACCTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACTAC16930.1269538939151366No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACCTGTCTCTTATACA15340.11503087611684558No Hit
GGACTCCTCCTTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC14840.11128149945071632No Hit
GCGTAACTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTACGCTG14610.10955678618429684No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)