FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004049073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004049073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1339141
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCT890366.6487397518259845No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC608754.545824524825989No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGA284922.1276325644573646No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG187471.3999272668076028No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCT130830.9769695648180439No Hit
CCTTCAGACCTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGA88850.6634850251019123No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA80010.5974725589015646No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTC66670.4978564617168767No Hit
GCGTAACTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTA45030.3362603340499619No Hit
CGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTC34830.2600921038187913No Hit
TGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTC28420.21222559834998705No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA25540.19071927452000947No Hit
CTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTA22720.16966099910315643No Hit
TCCTCAATGCTGTTGGGCTGTCTCTTATACACATCTCCGAGCCCACGAGA20580.15368060570171477No Hit
AGGGCTTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAG18510.13822293544891837No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA17610.13150220925205036No Hit
TCCTCAATGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTA14650.10939848753790678No Hit
AGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCT13610.10163231504374819No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)