FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004049079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004049079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1365120
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC405842.972925457102672No Hit
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAG378862.77528715424285No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCT123590.9053416549460853No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG100310.7348071964369433No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAG53830.3943243084857008No Hit
CCTTCAGACCTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCCT34160.2502344116268167No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA31140.22811181434599156No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA28170.2063554852320675No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTC26020.19060595405532116No Hit
GCGTAACTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGA22260.16306258790436007No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA18820.13786333802156586No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACCTGTCTCTTATACA18310.1341274027191749No Hit
CGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTC17400.12746132208157523No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC16790.1229928504453821No Hit
GGACTCCTCCTTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC16090.117865096108767No Hit
CTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCGT15540.11383614627285513No Hit
GGTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATC14160.10372714486638537No Hit
TGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTC13810.10116326769807782No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)