FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004049085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004049085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1238692
Sequences flagged as poor quality0
Sequence length76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC293182.3668514852764044No Hit
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCGGAGC205111.6558595679959183No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGG82460.6657022084586No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG73710.5950631795474581No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCGGAGC34840.2812644305444776No Hit
CCTTCAGACCTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCGG20430.16493204121767155No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA16830.13586912646565893No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGGAGCCTATCTC16230.1310253073403235No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA13760.11108491860769264No Hit
GCGTAACTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGGAGCC13090.10567598725106807No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)