FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004049089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004049089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1399546
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC401322.867501318284644No Hit
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAG381092.722954443798203No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCT107830.7704641362270336No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG103930.7425979567659798No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAG54450.38905473632163573No Hit
CCTTCAGACCTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCCT32410.23157509649557786No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA28650.2047092414254337No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA28070.20056504037737952No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTC24160.1726274091741179No Hit
GCGTAACTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGA20390.14569010236176588No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA19340.1381876694299437No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17840.12746990809876918No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACCTGTCTCTTATACA17570.12554071105915776No Hit
CGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTC16290.11639488805655548No Hit
CTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCGT16200.115751822376685No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC16020.11446569101694407No Hit
GGACTCCTCCTTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC15660.11189342829746218No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)