FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004049094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004049094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1203958
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC374823.1132315246877384No Hit
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCT303092.517446621892126No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG108410.900446693323189No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGA92970.7722030170487675No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCT56010.4652155639980797No Hit
CTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTATGCCGT48180.4001800727267895No Hit
CCTTCAGACCTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGA28410.23597168671996863No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA28050.23298154919025416No Hit
GGACTCCTCCTTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC23610.1961031863237754No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACCTGTCTCTTATACA23230.19294693004241012No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTC21460.17824542052131387No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTATGCC18860.1566499828067092No Hit
GCGTAACTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTA18240.15150030150553423No Hit
CGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTC17980.14934075773407376No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA14610.12134974808091312No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14160.11761207616877001No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACCTGTCTCTTATACACA12960.1076449510697217No Hit
TGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTC12750.10590070417738826No Hit
CTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTA12450.10340892290262617No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)