FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004049108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004049108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1477278
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGC466903.160542565448074No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC303002.0510696023361885No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACT85220.5768717871653135No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG59560.4031739455945326No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA36950.2501221841792811No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCTC36650.24809142219677002No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGC36240.2453160474873382No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA26770.18121166090607185No Hit
CCTTCAGACCTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACACT25070.1697040096718424No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA22720.1537963741421723No Hit
CTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCTCGTATGCCGT22100.14959946604498273No Hit
GGACTCCTCCTTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC20970.14195026257752436No Hit
CGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCTC19760.1337595225813963No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC18690.12651647151044015No Hit
GGTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATC17900.12116879828982764No Hit
GCGTAACTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGCT16940.1146703599457922No Hit
CCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGG16250.10999960738601672No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA15910.10769807713917083No Hit
TGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCTC14870.10065810226646575No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)