FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004049109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004049109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1906345
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCGATCA680373.5689762346269958No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC679173.5626814663662665No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGA216961.1380941015398576No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG170760.8957455235017796No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACCGATCA92950.48758225819565715No Hit
CCTTCAGACCTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCGA64040.3359307995142537No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA55280.2899789912109298No Hit
GCGTAACTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGATCAG37750.19802291820210927No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGATCAGTATCTC36780.1929346471913531No Hit
CGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACCGATCAGTATCTC22560.11834164330171086No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)