FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004049110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004049110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2102590
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC731213.477663262928103No Hit
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACTGCAGC579442.755839226858303No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG200350.9528724097422703No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGC189100.8993669712116961No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACTGCAGC80670.3836696645565707No Hit
CCTTCAGACCTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACTGC52670.25050057310269713No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA43340.20612672941467428No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGCAGCTAATCTC43010.20455723655111077No Hit
GCGTAACTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGCAGCT31680.15067131490209695No Hit
CGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGCAGCTAATCTC27280.1297447433879168No Hit
TGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGCAGCTAATCTC21110.10039998287825969No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)