FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004049112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004049112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1078461
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTAG531334.92674283075605No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC422313.915857875250009No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGCG109241.0129248994632165No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG107730.9989234659389631No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTAG85320.7911273564829883No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA39920.37015710350212017No Hit
CCTTCAGACCTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGCG39460.36589176613711577No Hit
CTTATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTATGCCGT33860.3139659199544536No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTC28810.2671399336647315No Hit
CGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTC24410.22634105452121125No Hit
GCGTAACTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTAGT24270.2250429083666447No Hit
GGACTCCTCCTTGTCTCTTATACACCTGTCTCTTATACACATCTCCGAGC23980.22235389133218542No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA23130.21447228967945992No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACCTGTCTCTTATACA21230.19685459186748522No Hit
CTGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTCGTA18400.17061349460017564No Hit
TGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTC18250.16922262372028288No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA14170.13139093578720046No Hit
TCCTCAATGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTAGT13440.12462203083838914No Hit
TGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTAGTAATCTC13390.12415840721175823No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC12070.11191874346870216No Hit
GGTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATC11090.10283172038673628No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)