FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004049114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004049114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1564296
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACATGCGC550073.5164061021699213No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC426472.72627431125567No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACATG143570.9177930519543616No Hit
TGTCCATGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCACG101140.6465528263193155No Hit
TGACTCCTCCTTGTCTCTTATACACATCTCCGAGCCCACGAGACATGCGC61640.3940430711323177No Hit
CCTTCAGACCTGACTGTCTCTTATACACATCTCCGAGCCCACGAGACATG43710.2794228202335108No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACATGCGCAGATCTC42640.2725826825613567No Hit
ATGCACTGCAGGTACTTGACTGTCTCTTATACACATCTCCGAGCCCACGA37220.23793450855848253No Hit
GCGTAACTGCTGTCTCTTATACACATCTCCGAGCCCACGAGACATGCGCA26540.16966098487754236No Hit
CGTCTGTCTCTTATACACATCTCCGAGCCCACGAGACATGCGCAGATCTC23320.1490766453407795No Hit
TGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACATGCGCAGATCTC19080.12197180073336504No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)