FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004049201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004049201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83817
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCAGATGTGTATAAGAGACAGTGTCCATGGCATCCATAGCGTCTGTCT5950.7098798573081833No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCTGT2940.35076416478757294No Hit
GATGTGTATAAGAGACAGTGTCCATGGCATCCATAGCGTCTGTCTCTTAT2450.29230347065631074No Hit
GCGTCAGATGTGTATAAGAGACAGGGACTCCTCCTTGTCTCTTATACACA2190.26128351050502885No Hit
GGACTCCTCCTTGTCTCTTATACACATCTCCGAGCTGTCTCTTATACACA2060.24577353042938782No Hit
GAGATGTGTATAAGAGACAGCCAGGTCTGAAGGCAGTCTCTTATACACAT2040.24338737964851997No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCTGTC1900.22668432418244508No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCTGTCTCTTATA1780.212367419497238No Hit
GCGTCAGATGTGTATAAGAGACAGTGTCCATGGCATCCATAGCGTCTGTC1750.2087881933259363No Hit
GTGTATAAGAGACAGCCAGGTCTGAAGGCAGTCTCTTATACACATCTCCG1630.1944712886407292No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCGAGCCCTGTCTCTTAT1360.16225825309901332No Hit
GATGTGTATAAGAGACAGCCAGGTCTGAAGGCAGTCTCTTATACACATCT1350.1610651777085794No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCAC1200.14316904685207058No Hit
GGACTCCTCCTTGTCTCTTATACACATCTCCGCTGTCTCTTATACACATC1170.1395898206807688No Hit
GTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATAT1170.1395898206807688No Hit
CCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGG1140.13601059450946706No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGCTGTCTC1110.1324313683381653No Hit
CCTTCAGACCTGGCTGTCTCTTATACACATCTCCTGTCTCTTATACACAT1090.13004521755729745No Hit
CGTCAGATGTGTATAAGAGACAGCCTTCAGACCTGGCTGTCTCTTATACA1050.12527291599556176No Hit
GCGTCAGATGTGTATAAGAGACAGTCCTCAATGCTGTTGGGCTGTCTCTT1040.12407984060512783No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCGAGCCCTG1040.12407984060512783No Hit
ATGCCCTGCAGTGCATCTGTCTCTTATACCTGTCTCTTATACACATCTCC1010.12050061443382608No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC990.11811446365295823No Hit
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC990.11811446365295823No Hit
TGTCCATGGCATCCATAGCGTCTGTCTCTTATACACATCTCCTGTCTCTT920.10976293591992078No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA890.106183709748619No Hit
GTGTATAAGAGACAGCCTTCAGACCTGGCTGTCTCTTATACACATCTCCG860.10260448357731725No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)