FastQCFastQC Report
Wed 8 May 2024
EGAF00004149640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004149640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4755516
Total Bases309.1 Mbp
Sequences flagged as poor quality0
Sequence length65
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTACAAGATCTCGTAT1454943.0594787190285975TruSeq Adapter, Index 14 (97% over 38bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTACAAGATCTCGTATG81310.17098039413598862TruSeq Adapter, Index 14 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)