FastQCFastQC Report
Wed 8 May 2024
EGAF00004149644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004149644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3853542
Total Bases250.4 Mbp
Sequences flagged as poor quality0
Sequence length65
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACGCTCGAATCTCGTAT952392.4714665105505533TruSeq Adapter, Index 15 (97% over 36bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACGCTCGAATCTCGTATG58590.1520419395973886TruSeq Adapter, Index 15 (97% over 35bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)