FastQCFastQC Report
Wed 8 May 2024
EGAF00004149652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004149652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6515953
Total Bases423.5 Mbp
Sequences flagged as poor quality0
Sequence length65
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTGAGGAATCTCGTAT1355252.079895296973443TruSeq Adapter, Index 25 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)