FastQCFastQC Report
Wed 8 May 2024
EGAF00004149654

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004149654
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11704095
Total Bases760.7 Mbp
Sequences flagged as poor quality0
Sequence length65
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAATGGAAATCTCGTAT3611183.085398742918611TruSeq Adapter, Index 2 (97% over 38bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAATGGAAATCTCGTATG186670.15949118663168746TruSeq Adapter, Index 2 (97% over 37bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)