FastQCFastQC Report
Mon 20 May 2024
EGAF00004150054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004150054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences213664029
Total Bases16 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT4591160.21487753560988967No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG2901970.13581930536374937No Hit
CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG2652450.12414115807953803No Hit
GCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGC2162520.10121123382916271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)