FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004151066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004151066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1181639
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA227251.9231761984836317No Hit
TGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA203631.7232843533431106No Hit
TTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGG112050.9482591552919293No Hit
GGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA87780.742866476140344No Hit
TTTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTG42240.3574695825036242No Hit
GGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA40150.33978228545266365No Hit
GGGGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA34310.2903594075686398No Hit
GGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGA30090.2546463006044994No Hit
TGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACTG23640.2000611015716306No Hit
GGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAG23430.19828390904497906No Hit
CAGCCCAATATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCA21090.1784809066051476No Hit
GCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAG20640.17467263690518No Hit
ATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTG20460.17314932902519298No Hit
GAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAA19880.16824089252301253No Hit
GTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACT19820.16773312322968353No Hit
GGAGGGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA19170.1622322892186192No Hit
AGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA18670.15800087844087746No Hit
GGGAGGGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA18560.15706996806977427No Hit
CAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAGGCA18300.15486963446534854No Hit
GGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGAC16560.14014432495880721No Hit
GTTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTG16050.1358282859655106No Hit
GTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGG15940.13489737559440743No Hit
TTGGGGGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGG15700.1328662984210914No Hit
GGGAGGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA15620.1321892726966527No Hit
TGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA15610.13210464448109785No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC14230.1204259507345306No Hit
TGGGGGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA14150.1197489250100919No Hit
GGAGTGGGAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA13460.11390957813680827No Hit
CCAGACAACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGA13430.11365569349014376No Hit
AGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAAC13310.11264015490348575No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC13010.11010130843684068No Hit
TGGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGG12680.10730857732353113No Hit
TGGGAGGGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA12230.10350030762356355No Hit
CCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACC12220.1034156794080087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)