FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004151067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004151067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1153884
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA223571.9375431152524862No Hit
TGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA198071.7165503638147335No Hit
TTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGG109690.9506154864787102No Hit
GGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA82430.7143699020005477No Hit
TTTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTG41800.3622547847097282No Hit
GGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA38450.333222403638494No Hit
GGGGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA31930.27671759032970383No Hit
GGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGA28950.2508917707499194No Hit
TGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACTG23610.20461328868413117No Hit
GGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAG22530.19525359568206163No Hit
GCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAG20460.17731418409476168No Hit
CAGCCCAATATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCA20450.17722752027066846No Hit
ATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTG20100.1741942864274052No Hit
GTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACT19270.16700118902766656No Hit
AGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA18660.16171469575797914No Hit
GAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAA18600.1611947128134197No Hit
GGAGGGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA18440.15980809162792795No Hit
GGGAGGGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA17590.15244166658000283No Hit
CAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAGGCA16990.14724183713440867No Hit
GGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGAC16550.14342862887430627No Hit
TTGGGGGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGG15740.1364088591227541No Hit
TGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA15610.13528222940954204No Hit
GGGAGGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA15150.13129569350125314No Hit
GTTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTG14800.12826245965798988No Hit
GTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGG14550.12609586405565898No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC13700.11872943900773389No Hit
TGGGGGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA13280.11508955839581794No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC12990.1125763074971141No Hit
CCAGACAACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGA12890.11170966925618173No Hit
CCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACC12820.11110302248752907No Hit
TGGGGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA12760.11058303954296965No Hit
TGGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGG12760.11058303954296965No Hit
GGAGTGGGAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA12520.10850310776473197No Hit
TGGGAGGGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA12300.10659650363468079No Hit
AGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAAC12160.10538321009737547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)