FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004151071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004151071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1738924
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA365472.1017019720240793No Hit
TGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA329631.8955975074241311No Hit
TTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGG183031.0525474373808172No Hit
GGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA135360.7784123975515893No Hit
TTTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTG68870.39604951107696484No Hit
GGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA65620.3773597926073825No Hit
GGGGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA56150.32290082832832256No Hit
GCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAG47130.271029671221974No Hit
GGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGA44490.25584786914206714No Hit
TGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACTG37190.21386788611808222No Hit
GGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAG36130.20777216255569536No Hit
GTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACT34470.1982260294296933No Hit
ATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTG32740.18827734852126948No Hit
CAGCCCAATATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCA32350.1860345823049196No Hit
GGAGGGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA31390.18051392700313526No Hit
GAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAA30930.17786861300436363No Hit
GGGAGGGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA30620.17608590139649577No Hit
AGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA29740.17102530070319347No Hit
CAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAGGCA28710.16510209761898736No Hit
GTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGG26850.15440582797178026No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25790.1483101044093934No Hit
TTGGGGGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGG25340.14572229723668198No Hit
TGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA25170.1447446811936577No Hit
GGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGAC25110.14439964023729618No Hit
GGGAGGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA24780.1425019149773078No Hit
GTTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTG24540.1411217511518617No Hit
TGGGGGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA24460.1406616965433797No Hit
TGGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGG23330.13416342519857108No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC21320.12260455316046015No Hit
CCAGACAACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGA20490.11783148659745912No Hit
TGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAA20400.11731392516291683No Hit
GGAGTGGGAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAA20400.11731392516291683No Hit
TGGGGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA20260.1165088295980733No Hit
TGGGAGGGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA20000.11501365212050671No Hit
AGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAAC19910.11449609068596442No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC19850.11415104972960291No Hit
GGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAAAACTGG18430.10598508042904693No Hit
GATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCA17650.10149954799634717No Hit
CCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACC17460.10040691830120235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)