FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004151081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004151081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1898374
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC84590.44559185913839955No Hit
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA79740.42004367948570726No Hit
GGGAGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAG62930.3314942155760667No Hit
GGGGAGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAA60840.32048479382882405No Hit
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG57970.30536659267351957No Hit
GGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC52460.27634175352169804No Hit
GGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTG47340.24937130407390748No Hit
GTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGCA46370.24426166814336903No Hit
GGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGT38020.2002766578134762No Hit
GGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA37460.19732676490512407No Hit
GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG35910.1891618827480781No Hit
GGAGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGC33010.17388565161554045No Hit
CGGGGGGAGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGG24790.13058543785365792No Hit
GCGGGGGGAGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTG23460.12357944219632169No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA23440.12347408887816627No Hit
GAGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCG22010.11594132663005287No Hit
GCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAG21230.11183254722199104No Hit
CGAATGGGGAAACCTACTAGACACACTCTAGTATCCATACGTAAATACAT20930.11025224744965956No Hit
TTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGCAG20580.10840856438193949No Hit
GAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA20230.10656488131421944No Hit
GGCGACGAAGGACGTGACAAGCAACGAAAACCTCGAGTAGGAGCAAATAT19500.10271948520154615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)