FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004151100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004151100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2388732
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAG36280.1518797420556178No Hit
GCGGTCCTCCAGCTCATCTTTCACCTCACCCCCCTCCTCCTCCTTGGCTT30320.12692926623832224No Hit
TTGCGGTCCTCCAGCTCATCTTTCACCTCACCCCCCTCCTCCTCCTTGGC28110.11767749584298282No Hit
GGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA26510.11097938152961487No Hit
GGGGAGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAA24140.10105779970293863No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)