FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004151255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004151255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2561805
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC119230.4654140342453855No Hit
GAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCT77600.3029114237812792No Hit
GCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAG74110.28928821670657995No Hit
GGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGA71680.27980271722476924No Hit
GGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTT56210.21941560735497043No Hit
GGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAG56160.2192204324685134No Hit
CGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGT37610.14681054959296277No Hit
GGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGAC36550.14267284200007416No Hit
GGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTC35300.13779346983864893No Hit
CGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGG34600.1350610214282508No Hit
GCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCT30130.11761238657899412No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA29660.11577774264629821No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTAT25660.10016375172973743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)