FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004151333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004151333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences349074
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTA7130.2042546852529836No Hit
GGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA7080.20282232420632873No Hit
TGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA5330.1526896875734085No Hit
GGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC4370.12518835547763513No Hit
GGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAG3820.1094323839644316No Hit
GAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCT3720.10656766187112188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)