FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004151374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004151374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2089630
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC47780.22865291941635602No Hit
GTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGCA41520.19869546283313314No Hit
GGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA31900.15265860463335615No Hit
GGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTG30900.14787306843795311No Hit
GGAGGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAG28740.13753631025588262No Hit
GGGAGGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAA27250.13040586132473214No Hit
GGGGAGGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAA22970.10992376640840723No Hit
TGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA22260.10652603570967109No Hit
GGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGT22010.10532965166082033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)