FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004151377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004151377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4363381
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC102730.23543669461823297No Hit
GTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGCA93030.21320622700607625No Hit
GGGAGGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAA70680.16198447946672545No Hit
GGAGGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAG70080.1606093989958704No Hit
GGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA68050.1559570434028108No Hit
GGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTG65220.14947124718194446No Hit
GGGGAGGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAA61080.1399831919330446No Hit
GGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGT50720.1162401358029473No Hit
TGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA48500.11115233806078359No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)