FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004151379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004151379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4379572
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC104810.23931562262248457No Hit
GTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGCA92620.21148185256458849No Hit
GGGAGGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAA69790.15935347106977577No Hit
GGAGGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAG68610.1566591438615463No Hit
GGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTG67820.15485531462891808No Hit
GGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGAA67710.15460414853323567No Hit
GGGGAGGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAA59000.134716360411474No Hit
GGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGT52150.11907556263488761No Hit
TGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGTTTGAAGTGGA47280.1079557545805846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)