FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004151744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004151744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1593962
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC336192.10914689308779No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA91300.5727865532553474No Hit
GGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC47430.2975604186298042No Hit
GCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAG46510.29178863737027605No Hit
AGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC42580.26713309351163955No Hit
GGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTT29470.1848852105633635No Hit
GATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCA29190.18312858148437666No Hit
GTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGCA27280.17114586169557366No Hit
GGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC26750.1678208137960629No Hit
CGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCA26610.16694249925656948No Hit
GGGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTG23840.14956441872516407No Hit
CGTGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC23190.14548652979180182No Hit
TGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC22730.14260063916203775No Hit
CGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGG22240.13952653827381079No Hit
GGGGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGT22230.13946380152098983No Hit
TGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAA22140.1388991707456012No Hit
GGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA21380.1341311775312084No Hit
GCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGT20420.1281084492603964No Hit
GGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAG18590.11662762349416109No Hit
GGGAGGGGGGGGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAA18080.11342804910029222No Hit
GGAGGGGGGGGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAG18010.11298889183054553No Hit
ACGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGT17850.11198510378541018No Hit
GGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGC16920.10615058577306108No Hit
GGGGAGGGGGGGGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAA16400.10288827462637128No Hit
CGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGT16310.10232364385098264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)