FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004151746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004151746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1617525
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC344552.130106180739092No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA93000.5749524736866509No Hit
GCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAG46750.2890218080091498No Hit
GGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC45780.28302499188575136No Hit
AGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC43810.27084589109905566No Hit
GATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCA30560.18893061931036614No Hit
GGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTT30410.18800327661087154No Hit
GTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGCA27450.16970371400751147No Hit
GGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC26430.1633977836509482No Hit
CGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCA25390.156968207601119No Hit
TGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC24930.15412435665600221No Hit
GGGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTG24790.1532588368031406No Hit
CGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGG23410.1447272839677903No Hit
CGTGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC23120.14293442141543405No Hit
TGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAA22600.13971963339051946No Hit
GGGGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGT21730.1343410457334508No Hit
GGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA21370.13211542325466377No Hit
GCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGT19890.12296564195298373No Hit
GGGAGGGGGGGGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAA19110.1181434599156118No Hit
ACGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGT18600.11499049473733018No Hit
GGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAG18510.11443408911763343No Hit
GGAGGGGGGGGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAG18010.11134294678598476No Hit
GGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGC16980.10497519358278852No Hit
CGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGT16790.10380055949676203No Hit
GGGGAGGGGGGGGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAA16480.10188405125113986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)