FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004151751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004151751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1978947
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC418062.1125376273341328No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCA114330.5777314905351179No Hit
GCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAG58320.2947021825243425No Hit
GGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC57260.2893457985484199No Hit
AGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC52930.2674654753260194No Hit
GATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCA38070.19237503581450136No Hit
GGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTT37320.18858514149191463No Hit
GTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGCA34360.17362769189877245No Hit
GGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC34120.17241492571554468No Hit
CGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCA30500.15412236911852617No Hit
TGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC30090.15205056022217878No Hit
GGGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTG29730.15023141094733714No Hit
CGTGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC28720.14512768659292039No Hit
TGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAA28590.14447077157700533No Hit
GGGGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGT28400.14351066501528337No Hit
GGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA26660.13471811018688223No Hit
CGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGG26200.13239364166902903No Hit
GCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGT23950.1210239587012689No Hit
ACGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGT22180.11207980809996426No Hit
GGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAG21420.10823938185307641No Hit
GGAGGGGGGGGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAAG21050.10636970065393363No Hit
GGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGC20700.10460108330339318No Hit
TCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGT20580.1039947002117793No Hit
GGGAGGGGGGGGTTTGGTGAAAATTTTTTGTTATGATGTCTGTGTGGAAA20370.10293352980145502No Hit
CGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGT19970.10091225282940876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)