FastQCFastQC Report
Wed 1 May 2024
EGAF00004167390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004167390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22310109
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC642760.28810258165928276No Hit
CTCAGATTCAACTGGCAGTAACCAGAATGGAGAACGCAGTGGGGCGCGAT596220.2672420829499309No Hit
CGGGGACCGGCGGGCCACGGGCCCGGCTCGGCGCGGCCGCCTCCGCGGCT539680.2418993112046203No Hit
CTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAG535620.24007950835202105No Hit
CGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTA390230.1749117406822172No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGC350150.15694679035409465No Hit
CCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACCGCTCTCACTCAAC348320.1561265343885142No Hit
CCAGAATGGAGAACGCAGTGGGGCGCGATCAAAACAACGTCGGCCCCAAG323640.14506428453576806No Hit
GGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTC322810.14469225587378348No Hit
CGCGCATTGGCATGGAAGTCACACCTTCGGGAACGTGGTTGACCTACACA294300.1319132954482652No Hit
AAACCAACCAACTTTCGATCTCTTGTAGATCTGTTCTCTAAACGAACAAA292020.1308913371960666No Hit
CCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTCAAAGAT291020.1304431098924707No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC290410.13016969123727723No Hit
GTCTACTCTTGTGCAGAATGAATTCTCGTAACTACATAGCACAAGTAGAT286080.1282288670127071No Hit
CTTTAATCAGTGTGTAACATTAGGGAGGACTTGAAAGAGCCACCACATTT283180.12692900783227906No Hit
CGCAGAGACAGAAGAAACAGCAAACTGTGACTCTTCTTCCTGCTGCAGAT282240.12650767416689895No Hit
CAAAGATCCAAATTTCAAAGATCAAGTCATTTTGCTGAATAAGCATATTG270740.12135306017554642No Hit
GTTAACTTTAATCTCACATAGCAATCTTTAATCAGTGTGTAACATTAGGG269840.12094965560231015No Hit
CTTAAATTCCCTCGAGGACAAGGCGTTCCAATTAACACCAATAGCAGTCC257570.1154499065871888No Hit
CTGGGCCAGAAGCTGGACTTCCCTATGGTGCTAACAAAGACGGCATCATA249110.11165790359876772No Hit
TGAAACTCAAGCCTTACCGCAGAGACAGAAGAAACAGCAAACTGTGACTC241130.10808104971607266No Hit
CTAAAATGTCTGATAATGGACCCCAAAATCAGCGAAATGCACCCCGCATT235690.10564269318451111No Hit
CCAGCTTGAGAGCAAAATGTCTGGTAAAGGCCAACAACAACAAGGCCAAA234910.10529307588770632No Hit
CACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAA228980.10263508797738281No Hit
GTCACACCTTCGGGAACGTGGTTGACCTACACAGGTGCCATCAAATTGGA227130.10180586746573045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)