FastQCFastQC Report
Thu 9 May 2024
EGAF00004167396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004167396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24068724
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGATTCAACTGGCAGTAACCAGAATGGAGAACGCAGTGGGGCGCGAT438170.18204953449131744No Hit
CTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAG390650.16230606990216848No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG284740.11830290629449239No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG267510.11114423847313219No Hit
CCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACCGCTCTCACTCAAC252560.10493285809418065No Hit
GGTTGACCTACACAGGTGCCATCAAATTGGATGACAAAGATCCAAATTTC251600.10453400022369279No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)