FastQCFastQC Report
Fri 31 Mar 2023
EGAF00004167652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004167652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17259299
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN336460.1949441863195023No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC245920.14248550882628547No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG222190.12873639885374255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)