FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004169871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004169871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47531959
Sequences flagged as poor quality0
Sequence length35-151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC1446090.3042353040824596No Hit
CAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTC922480.19407573754744678No Hit
CACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGAC803610.16906730059242878No Hit
ACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCT637970.1342191682021774No Hit
CTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTG637450.1341097681246422No Hit
TGACGACCTACGCACACGAGAACATGCCTCTCGCAAAGGATCTCCTTCAT484600.1019524568722278No Hit
GTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTGAG478130.10059126744597251No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)