FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004169879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004169879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53547329
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGGCTTTGACAGAGTGCAAGACGATGACTTGCAAAATGTCGCAGCTGG1277700.23861134137988468No Hit
GGCTCCTCGGCTTTGACAGAGTGCAAGACGATGACTTGCAAAATGTCGCA1185380.22137051877975092No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG633400.11828787949441884No Hit
CCTCGGCTTTGACAGAGTGCAAGACGATGACTTGCAAAATGTCGCAGCTG591440.11045182104227833No Hit
CTCCTCGGCTTTGACAGAGTGCAAGACGATGACTTGCAAAATGTCGCAGC566950.10587829693615532No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)