FastQCFastQC Report
Wed 6 Sep 2023
EGAF00004170022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004170022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81917639
Sequences flagged as poor quality0
Sequence length35-76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG1757650.21456306864508146No Hit
GTGAAATATTAGTTGGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAA843970.10302665095120722No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGCCAGTATCAGGCGGCGGCTTCGA823840.10056930473789655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)