FastQCFastQC Report
Wed 27 Sep 2023
EGAF00004170098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004170098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67541157
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT943870.1397473839543495No Hit
GTTTGGATGTAAAGTGAAATATTAGTTGGCGGATGAAGCAGATAGTGAGG730800.10820069309739541No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA694500.10282619233188438No Hit
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA688950.10200447114046328No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG684840.10139595328519468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)