FastQCFastQC Report
Tue 5 Sep 2023
EGAF00004172473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004172473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45511670
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAACCCCACTCTGCATCAACTGAACGCAAACCAGCCACTTTAATTAAG742590.16316474433919914No Hit
CCCCACTCTGCATCAACTGAACGCAAACCAGCCACTTTAATTAAGCTAAG646110.14196578591820516No Hit
CGCAAACCAGCCACTTTAATTAAGCTAAGCCCTTACTAGACCAATGGGAC609840.13399640136255161No Hit
GTAAATCTAAAGACAGGGGTTAGGCCTCTTTTTACCAGCTCCGAGGTGAT529220.11628226342825917No Hit
TTGGACTGTAAATCTAAAGACAGGGGTTAGGCCTCTTTTTACCAGCTCCG497390.10928845282979069No Hit
TGTAAATCTAAAGACAGGGGTTAGGCCTCTTTTTACCAGCTCCGAGGTGA465700.10232540357231452No Hit
GTCCACCCCAGTGCACCCACTCTGCTTTGACTGAGCAGACTGGTGAGCAG460740.10123557320572943No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)