FastQCFastQC Report
Tue 8 Aug 2023
EGAF00004172474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004172474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45511670
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAACCCCACTCTGCATCAACTGAACGCAAACCAGCCACTTTAATTAAG605900.133130689337482No Hit
GTAAATCTAAAGACAGGGGTTAGGCCTCTTTTTACCAGCTCCGAGGTGAT588320.1292679438043034No Hit
TTGGACTGTAAATCTAAAGACAGGGGTTAGGCCTCTTTTTACCAGCTCCG527440.11589115494992823No Hit
TGTAAATCTAAAGACAGGGGTTAGGCCTCTTTTTACCAGCTCCGAGGTGA523210.11496172300423167No Hit
CGCAAACCAGCCACTTTAATTAAGCTAAGCCCTTACTAGACCAATGGGAC515620.11329401887471939No Hit
CCCCACTCTGCATCAACTGAACGCAAACCAGCCACTTTAATTAAGCTAAG503670.11066831869716053No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)