FastQCFastQC Report
Thu 16 May 2024
EGAF00004172516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004172516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47669242
Total Bases7.1 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCATTTGTCTTTATTTTTCCTCAGCGACTAAAGGCAGCAGCAGTGCCC865930.18165382197602387No Hit
CTGACACGTCCACCCCAGTGCACCCACTCTGCTTTGACTGAGCAGACTGG645180.13534513512927265No Hit
GTCCACCCCAGTGCACCCACTCTGCTTTGACTGAGCAGACTGGTGAGCAG510450.10708162718425437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)