FastQCFastQC Report
Thu 14 Sep 2023
EGAF00004172559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004172559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42400261
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA807040.19033845098264843No Hit
AAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATTTTGGC606450.14302977993460939No Hit
GTAAGAGTCAGAAGCTTATGTTGTTTATGCGGGGAAACGCCATATCGGGG575530.13573737199400732No Hit
GTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTCGA524180.1236265974872183No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG508540.11993794094805217No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA484470.11426108910037133No Hit
GGAAAGTTGAGCCAATAATGACGTGAAGTCCGTGGAAGCCTGTGGCTACA445590.10509133422551338No Hit
GTGGAAGTGAGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTG430120.10144277177916428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)