FastQCFastQC Report
Thu 16 May 2024
EGAF00004172575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004172575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48964716
Total Bases7.3 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGTCTTTATTTTTCCTCAGCGACTAAAGGCAGCAGCAGTGCCCTGAAG875390.1787797564270566No Hit
ATTTTTCCTCAGCGACTAAAGGCAGCAGCAGTGCCCTGAAGATTAGCAGC823590.16820071007866155No Hit
GTAAAACTGAGGCACGAGCAAAGTGAAGACACTGGCTCATATTCCTGCAG753460.15387815176953135No Hit
TTTTCCTCAGCGACTAAAGGCAGCAGCAGTGCCCTGAAGATTAGCAGCAG600280.12259440042499173No Hit
CTGACACGTCCACCCCAGTGCACCCACTCTGCTTTGACTGAGCAGACTGG566880.11577316204591076No Hit
CTTTATTTTTCCTCAGCGACTAAAGGCAGCAGCAGTGCCCTGAAGATTAG560920.11455595902976339No Hit
GTCCACCCCAGTGCACCCACTCTGCTTTGACTGAGCAGACTGGTGAGCAG533380.10893150079743137No Hit
GTTTTATTGAATTAGTTGCATGCAGGAGCAATTCTGTTCTTCCCATGAGC492580.10059897008286539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)