FastQCFastQC Report
Wed 27 Sep 2023
EGAF00004172671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004172671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42845531
Sequences flagged as poor quality0
Sequence length150
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAATCAGCCACTTTAATTAAGCTAAGCCCTTACTAGACCAATGGGAC499100.11648822837555683No Hit
GGGTGAGGTAAAATGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACA495050.11554297226471531No Hit
GCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAA458540.1070216634729069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)