FastQCFastQC Report
Mon 6 Mar 2023
EGAF00004174252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004174252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125044759
Sequences flagged as poor quality0
Sequence length80
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2004120.16027221100885963No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1760910.14082237545037773No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1263340.10103102361931059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)