FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004174437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004174437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10130451
Sequences flagged as poor quality0
Sequence length32-151
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3603493.557087438654014No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG712450.7032756981895476No Hit
TGGTGGGTGAACCGCCGGCGGAGAATGGACTCCAGCGCCATCCACTTGAT251640.2483996023474177No Hit
CTGGAGGCAGTGTTTGGGGGAGGGCAGTTACAGCGGAGAAGGGAGCGGGG208390.20570653764575733No Hit
GGTCATCATGCCCACTCTTACCCATCAAAGCTCTCCGGCAGAAATGCCAG205950.2032979578105654No Hit
CTGCGGCTCCCTGCCAGTCCCGAGACCCACCTGGACATGCTCCGCCACCT179600.17728726983625903No Hit
CCCTCTTTCTCAGTGCTCACTTGTGCAGAATTCGTCCCCGGATTACTTGC159190.15714009178860844No Hit
TGCCCTGGGACCAGCTCTTTCGGAACCCGCACCAAGCTCTGCTCCACACT152130.15017100423268423No Hit
GCCACGCACATTTGACCATGATCATGTAGACATCAATGGTGCAGATGGGG152070.15011177685968768No Hit
GGACAGAACCAGAGACAGGCAGTGAGAGAGATGTCTAACAGCGAGAGGAC140150.1383452720910451No Hit
CTGGGGGTTCCGCTGGATCAAGACCCCTCCTTTCAAGATCTCTGTGGGGT137880.13610450314601No Hit
CTCCCGCAGGCCTCCTGGGGAGGCCCCTGTGACAGGGGTGGTATTGTTCA134360.13262983059688063No Hit
AGCCCGGGGCCGGCCTGGTGTCCGGGGCCGAGGTGACACCGTGGGCTGGGGGGGCGGTGG132860.13114914627196755No Hit
CCTGGGGGGACAGGTGGCTGGCTTTCACTGTGCTGTTTTGCCCTGGTGTG129690.1280199667319846No Hit
CCCCCTCTTTCTCAGTGCTCACTTGTGCAGAATTCGTCCCCGGATTACTT127600.125956879905939No Hit
GCCCCACCCTCCTCCTGCCTTCAGCCCAGCCTTCGACAACCTCTATTACT123140.12155431184653082No Hit
TGTAGACCCTCTTAAGATCATGCTTTTCAGATACTTCAAAGATTCCAGAA121110.11955045239348179No Hit
CCGGTTGGCAGTGTGGAGCAGAGCTTGGTGCGGGTTCCGAAAGAGCTGGT119730.11818822281456176No Hit
CAGAGGGCAGGGGTACTGTGGGGTCCTCACTGTACCGCTGTAGAGGGCTG118230.1167075384896487No Hit
GGCACAGGGCTTGCTGCACTTCTCACACCGCTGTGTTCCATCCTCTGCTG118100.1165792125148229No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA116480.11498007344391675No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG112460.11101183945314971No Hit
CTCTTTGAGGACAACTATGCCCTGGCCGTGCTAGACAATGGAGACCCGCT112080.11063673275750506No Hit
CGCCCACCCCAGGACCTGGCCCTGACCTTGTAGACTGTGCCAAAAGCGCC111130.10969896601839345No Hit
CTGTCTGCCCTGACACTGTCTCAGGTCATCATGCCCACTCTTACCCATCA110660.10923501826325403No Hit
CCACCCCTGTTCTCCGATGTGTAAGGGCTCCCGCTGCTGGGGAGAGAGTT107560.10617493732510033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)