FastQCFastQC Report
Fri 31 Mar 2023
EGAF00004174466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004174466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16381532
Sequences flagged as poor quality0
Sequence length32-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN5003953.054628834470427No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA344240.21013907612548083No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG294010.17947649829088025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)