FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004174491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004174491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5533224
Sequences flagged as poor quality0
Sequence length32-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN410250.7414303125989478No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG180840.32682573486994204No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA159720.2886563059800218No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG123060.2224019848103023No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN71610.12941821982988577No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)